DefineMotifs

DefineMotifs[str, rules]⟹out

apply the replacement rules in rules to all motifs in str. Any motifs not replaced by rules will be replaced with the letter N.

DefineMotifs[expr, rules]⟹out

apply the replacement rules in rules to every strand in the expression expr.

Details

	MissingMotifs	No replacement rules given for the motifs: `1`. These motifs were replaced with 'N'
	NonPairingMotifs	Resulting Structure does not satisfy validMotifsQ

Replace sequence-less motifs with sequences:

Revcomps given sequences when necessary:

Gives warning and substitutes in 'N' for motifs not specified:

Gives warning if structure contains invalid bonds after substituting in motif sequences: