Documentation

ReverseComplementSequence

ReverseComplementSequence[seq]⟹revCompSequence

give the reverse complement sequence to the provided seq.

ReverseComplementSequence[str]⟹revCompStrand

give the reverse complement sequence to the provided str.

ReverseComplementSequence[motif]⟹rcMotif

given a motif name, will either add or remove the ' character to denote the reverse compliment motif name.

Details

ReverseComplementSequence works with the motif naming and the tick symbol "'" to denote reverse complements of given motifs.

Input

Output

General Options

Examples

Basic Examples (3)

Given a sequence input will return the reverse complementary sequence:

If provided a Strand, the function returns a reverse complementary Strand:

If provided a motif name, returns the reverse complimentary motif (' signify reverse complimentarity):

Additional Examples (2)

The function can handle degenerate sequences as well:

The reverse complement for LNAChimera:

Options (6)

ExplicitlyTyped (2)

The ExplicitlyTyped option can be used to request that the ouput be explicitly typed:

If ExplicitlyTyped is set to automatic, will match the typing of the input:

IncludeModification (2)

Leave modifications as they are in the strand:

Remove any modifications:

Motif (1)

The motif option can be used to indicate that a string input is a motif rather than a sequence:

Polymer (1)

The Polymer option can be used to disambiguate input:

Attributes (1)

Listable (1)

The function is listable across sequences, strands, or motifs:

Messages (1)

RemoveModification (1)

Return Null for cases where modification is asked to be removed but cannot: