Documentation

ReverseComplementSequenceQ

ReverseComplementSequenceQ[sequenceA,sequenceB]⟹out

returns true of sequenceA is the reverse complement of sequenceB.

ReverseComplementSequenceQ[strandA,strandB]⟹out

returns true of strandA is the reverse complement of strandB.

ReverseComplementSequenceQ[motifA,motifB]⟹out

returns true if motifA is the reverse complement of motifB (name motif with a ' after it).

Details

Works on any combination of explicitly typed or non explicitly typed sequences.

Input

Output

General Options

Examples

Basic Examples (3)

The function ReverseComplementSequenceQ is used to check if two sequences are the reverse complement of eachother:

The function also works on strands as well as sequences:

Motif names can also be exampined to see if they are reverse complementary by checking for a tick mark:

Additional Examples (4)

Works with explicitly typed and implicitly typed sequences:

Can also mix and match explicitly typed and implicitly typed sequences:

Non-Pairing sequences are not considered reverse complements:

Test the reverse complement for LNAChimera:

Options (13)

CanonicalPairing (2)

The CanonicalPairing option can be used to allow for matches across RNA/DNA polymers:

Or if set to False, the CanonicalPairing option will require a strict match across polymers:

Degeneracy (4)

The Degeneracy option can be used to allow degenerate sequences to match:

Or if set to False the Degeneracy option can be used to require a strict match:

Degenerate numeric sequences are considered matches when Degeneracy is set to True:

Degenerate numeric sequences are not considered matches when Degeneracy is set to False:

Motif (5)

The Motif options is used to disambiguate cases where a the inputs could be sequences or motifs:

If the Motif option is set to False, the function will assume its considering sequences:

If the Motif option is set to True, the function will assume its considering motif names:

If the Motif option is set to Automatic and the case is ambigous, the function assumes its considering sequences:

In the context of a sequence, motif names are ignored by ReverseComplementSequenceQ:

Polymer (2)

The Polymer option is used to establish the polymer types of implicitly typed sequences when considering a match:

And thus it can be used to require strict matching of the polymer in a comparison:

Attributes (2)

Listable (2)

The function is listable by sequences:

The function MapThreads over pairs of lists: