Documentation

ToSequence

ToSequence[com]⟹comSeqs

returns a list of sequences in the strand.

ToSequence[str]⟹strSeqs

returns a list of sequences in the motifs.

Details

Input

Output

General Options

Examples

Basic Examples (2)

Pull sequences from a Strand:

Pull sequences from a Structure:

Additional Examples (3)

Pull sequences from a Structure:

Strands with modifications:

Strand with PNA:

Options (11)

Consolidate (6)

Consolidate adjacent motifs of same type:

Consolidate adjacent motifs of same type:

Do not consolidate adjacent motifs of same type:

Consolidate:

Consolidate:

Consolidate:

Map (1)

If True, Map ToSequence over list of inputs:

Output (3)

Return all bases from motifs involved in Pairing:

Return only bases involved in the Pairing:

Return only bases involved in the Pairing:

Replace (1)

If True, replaces motif lengths with character 'N':

Messages (3)

InvalidSequence (1)

Given invalid sequence:

InvalidStrand (1)

Given invalid strand:

InvalidStructure (1)

Given invalid structure: