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UploadOligomer

UploadOligomer[myInputs]oligomerModel

creates/updates a model oligomerModel that contains the information given about the oligomer.

UploadOligomer[myOligomerName]oligomerModel

returns a new model oligomerModel that contains the information given about the oligomer.

UploadOligomer[myOligomerObject]oligomerModel

updates an existing model oligomerModel that contains the information given about the oligomer.

Details
Input
Output
Analysis & Reports Options
Compatibility Options
Health & Safety Options
Organizational Information Options
Physical Properties Options
Storage Information Options
Basic Examples  (1)

Upload a model for a biological macromolecule composed of a limited number of monomeric units:

Options  (37)Acid  (1)

Use the Acid option to specify that pure samples of this identity model are strong acids:

Base  (1)

Use the Base option to specify that pure samples of this identity model are strong bases:

BiosafetyLevel  (1)

Use the BiosafetyLevel option to specify the biosafety level of this identity model. The valid value of this options can be found by evaluating BiosafetyLevelP ("BSL-1","BSL-2","BSL-3","BSL-4"):

BoilingPoint  (1)

Use the BoilingPoint option to provide the temperature at which the liquid form of this identity model will evaporate:

Density  (1)

Use the Density option to set the density of this uploaded identity model:

DOTHazardClass  (1)

Use the DOTHazardClass option to set the DOT Hazard Class of this uploaded identity model. The valid values of this option can be found by evaluating DOTHazardClassP. The following identity model is part of DOT Hazard Class 0:

DrainDisposal  (1)

Use the DrainDisposal option to specify that pure samples of this identity model can be safely disposed down a standard drain:

Enthalpy  (1)

Use the enthalpy option to indicate the expected binding enthalpy for the binding of this oligomer. If Watson-Crick paring is not present in this structure, the Enthalpy is calculated with the structure bound to its reverse complement:

Entropy  (1)

Use the entropy option to indicate the expected binding entropy for the binding of this oligomer. If Watson-Crick paring is not present in this structure, the Entropy is calculated with the structure bound to its reverse complement:

ExpirationHazard  (1)

Use the ExpirationHazard option to indicate that samples that contain this identity model are hazardous when they become expired:

ExtinctionCoefficients  (1)

Use the ExtinctionCoefficients option to set the Extinction Coefficient of this uploaded identity model. This field is in the format {{Wavelength,ExtinctionCoefficient}..}:

Flammable  (1)

Use the Flammable option to indicate if pure samples of this identity model easily combust:

FreeEnergy  (1)

Use the free energy option to indicate the expected Gibbs Free Energy for the binding of oligomer at 37 Celsius. If Watson-Crick paring is not present in this structure, the Gibbs Free Energy is calculated with the structure bound to its reverse complement:

Fuming  (1)

Use the Fuming option to specify that pure samples of this identity model produce fumes when exposed to air:

HazardousBan  (1)

Use the HazardousBan option to indicate that sample that contain this identity model are currently banned from usage in the ECL because the facility isn't yet equipped to handle them:

IncompatibleMaterials  (1)

Use the IncompatibleMaterials option to specify the list of materials that would become damaged if wetted by this identity model. Use MaterialP to see the materials that can be used in this field. Specify {None} if there are no IncompatibleMaterials:

LightSensitive  (1)

Use the LightSensitive option to specify if the identity model is light sensitive and special precautions should be taken to make sure that samples that contain this identity model should be handled in a dark room:

LiquidHandlerIncompatible  (1)

Use the LiquidHandlerIncompatible option to specify that pure samples of this identity model cannot be reliably aspirated or dispensed by a liquid handling robot (ex. Methanol):

LiteratureReferences  (1)

Use the LiteratureReferences option to link to scholarly articles that mention this identity model:

MeltingPoint  (1)

Use the MeltingPoint option to provide the temperature at which the solid form of this identity model will melt:

MSDSRequired  (1)

Use the MSDSRequired option to indicate that an MSDS file must be supplied for this identity model. An MSDS file is required by SLL the identity model is detected to be hazardous, however, it is best to always provide an MSDS when possible:

Name  (1)

Use the Name option to set the name of this new identity model:

NFPA  (1)

Use the NFPA option to specify the National Fire Potection Association (NFPA) 704 Hazard diamond classification of this substance. This option is specified in the format {HealthRating,FlammabilityRating,ReactivityRating,SpecialConsiderationsList}. The valid symbols to include in SpecialConsiderationsList are Oxidizer|WaterReactive|Aspyxiant|Corrosive|Acid|Bio|Poisonous|Radioactive|Cryogenic|Null. The following identity model, as an NFPA of {1,0,0,{Radioactive}} which means that its Health rating is 1, its Flammability rating is 0, and its Reactivity rating is 0. This identity model has no special considerations:

ParticularlyHazardousSubstance  (1)

Use the ParticularlyHazardousSubstance option to specify that special precautions should be taken in handling samples that contain this identity model. This option should be set to True if the GHS Classification of the identity model is Danger or higher:

pH  (1)

Use the pH option to specify the logarithmic concentration of hydrogen ions of a pure sample of this identity model at room temperature and pressure:

pKa  (1)

Use the pKa option to specify the logarithmic acid dissociation constant for the hydrogen ions present in this identity model:

PolymerType  (1)

Use the PolymerType option to indicate the type of polymer the oligomer is composed of (not counting modifications):

Pungent  (1)

Use the Pungent option to indicate that pure samples of this identity model have a strong odor:

Pyrophoric  (1)

Use the Pyrophoric option to specify that pure samples of this identity model ignite spontaneously with contact with air:

Radioactive  (1)

Use the Radioactive option to specify if this pure samples of this identity model contain unstable atomic nucleuses which lose energy by radiation:

State  (1)

Use the State option to set the state of matter (Solid, Liquid, Gas) of a pure sample of this identity model at room temperature and standard pressure:

Synonyms  (1)

Use the Synonyms option add additional names that this identity model goes by:

UltrasonicIncompatible  (1)

Use the UltrasonicIncompatible option to specify that volume measurements of pure samples of this identity model cannot be performed via the ultrasonic distance method due to vapors interfering with the reading (ex. Methanol):

VaporPressure  (1)

Use the VaporPressure option to provide the equilibrium pressure of this identity model when it is in thermodynamic equilibrium with its condensed phase:

Ventilated  (1)

Use the Ventilated option to specify that the pure samples of this identity model need to be handled in a ventilated enclosure:

Viscosity  (1)

Use the Viscosity option to provide the internal friction of this identity model, measured by the force per unit area resisting a flow between parallel layers of liquid:

WaterReactive  (1)

Use the WaterReactive option to specify that pure samples of this identity model react violently with contact with water:

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Made for Mathematica By Emerald Cloud Lab | Last modified in September 2020 | Authored By: thomas